The current standalone release is plantiSMASH 1.0 (December 12th, 2019).
First of all, download the plantiSMASH python source from our GitHub repo:
Then, make sure you have the following plantiSMASH dependencies installed:
Then, create a python virtualenv for installing the plantiSMASH python dependencies. This is not required, but highly recommended.
virtualenv as3source as3/bin/activate
All the python dependencies are listed in
requirements.txt, you can grab them all and install them with a simple command:
pip install -r requirements.txt
Last but not least, run
download_databases.py to grab and prepare the databases: