Plant Secondary Metabolite Analysis
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Due to the limited server's resource, users can now only upload annotated fasta files (i.e. fasta + gff3). Please first run your assembly on gene finding tools such as AUGUSTUS or MAKER before submitting it into plantiSMASH. If you are analysing a publicly available genome, please check ‘Precalculated results’ first before submitting a job.
Search plant genome sequence for secondary metabolite biosynthesis gene clusters:
Additional analysis:
Gene cluster comparative analysis (ClusterBlast):
Gene expression analysis (CoExpress):
Advanced options:
Show advanced options

CD-HIT Cutoff
: (default: 0.5)
Minimum unique domains
: (default: 2)
MAD Cutoff (CoExpress)
: (default: not set; only filter out genes with 0 MAD)
Display results for an existing job